Please use this identifier to cite or link to this item: http://bura.brunel.ac.uk/handle/2438/28484
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dc.contributor.authorWilliams, J-
dc.contributor.authorAhlqvist, H-
dc.contributor.authorCunningham, A-
dc.contributor.authorKirby, A-
dc.contributor.authorKatz, I-
dc.contributor.authorFleming, J-
dc.contributor.authorConway, J-
dc.contributor.authorCunningham, S-
dc.contributor.authorOzel, A-
dc.contributor.authorWolfram, U-
dc.date.accessioned2024-03-07T14:42:59Z-
dc.date.available2024-03-07T14:42:59Z-
dc.date.issued2024-01-26-
dc.identifierORCiD: Josh Williams https://orcid.org/0000-0002-7525-3622-
dc.identifierORCiD: Andrew Kirby https://orcid.org/0000-0001-7043-0549-
dc.identifierORCiD: Joy Conway https://orcid.org/0000-0001-6464-1526-
dc.identifierORCiD: Alin Ozel https://orcid.org/0000-0002-0133-2002-
dc.identifiere0297437-
dc.identifier.citationWilliams, J. et al. (2024) ''Validated respiratory drug deposition predictions from 2D and 3D medical images with statistical shape models and convolutional neural networks, PLoS ONE, 2024, 19 (1), e0297437, pp. 1 - 32. doi: 10.1371/journal.pone.0297437.en_US
dc.identifier.urihttp://bura.brunel.ac.uk/handle/2438/28484-
dc.descriptionData Availability: The data and code underlying the results presented in the study are available from https://doi.org/10.5281/zenodo.10512507 which provides a static link to our git repository (https://github.com/jvwilliams23/respiratory2Dto3Dpaper).en_US
dc.descriptionSupporting information is available online at: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0297437#sec017 .-
dc.description.abstractFor the one billion sufferers of respiratory disease, managing their disease with inhalers crucially influences their quality of life. Generic treatment plans could be improved with the aid of computational models that account for patient-specific features such as breathing pattern, lung pathology and morphology. Therefore, we aim to develop and validate an automated computational framework for patient-specific deposition modelling. To that end, an image processing approach is proposed that could produce 3D patient respiratory geometries from 2D chest X-rays and 3D CT images. We evaluated the airway and lung morphology produced by our image processing framework, and assessed deposition compared to in vivo data. The 2D-to-3D image processing reproduces airway diameter to 9% median error compared to ground truth segmentations, but is sensitive to outliers of up to 33% due to lung outline noise. Predicted regional deposition gave 5% median error compared to in vivo measurements. The proposed framework is capable of providing patient-specific deposition measurements for varying treatments, to determine which treatment would best satisfy the needs imposed by each patient (such as disease and lung/airway morphology). Integration of patient-specific modelling into clinical practice as an additional decision-making tool could optimise treatment plans and lower the burden of respiratory diseases.en_US
dc.description.sponsorshipFunding: Simulations reported in this study were performed on Oracle cloud computing platform, funded by Open Clouds Research Environments (OCRE) ‘Cloud Funding for Research’. JW was funded by a 2019 PhD Scholarship from the Carnegie-Trust for the Universities of Scotland. The in vivo deposition data used in this study was obtained from a project sponsored by Air Liquide.en_US
dc.format.extent1 - 32-
dc.languageEnglish-
dc.language.isoen_USen_US
dc.publisherPLOSen_US
dc.rightsCopyright: © 2024 Williams et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.-
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/-
dc.subjectx-ray radiographyen_US
dc.subjectpulmonary imagingen_US
dc.subjectcomputed axial tomographyen_US
dc.subjectinhalationen_US
dc.subjecttracheaen_US
dc.subjectsimulation and modelingen_US
dc.subjectrespiratory physiologyen_US
dc.subjectin vivo imagingen_US
dc.titleValidated respiratory drug deposition predictions from 2D and 3D medical images with statistical shape models and convolutional neural networksen_US
dc.typeArticleen_US
dc.identifier.doihttp://dx.doi.org/10.1371/journal.pone.0297437-
dc.relation.isPartOfPLoS ONE-
pubs.issue1-
pubs.publication-statusPublished-
pubs.volume19-
dc.identifier.eissn1932-6203-
dc.rights.licensehttps://creativecommons.org/licenses/by/4.0/legalcode.en-
dc.rights.holderWilliams et al.-
Appears in Collections:Dept of Health Sciences Research Papers

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